Tooluniverse
    Tooluniverse

    Tooluniverse

    ToolUniverse is a collection of biomedical tools designed for AI agents

    4.3

    GitHub Stats

    Stars

    148

    Forks

    21

    Release Date

    6/7/2025

    about a month ago

    Detailed Description

    ToolUniverse

    ProjectPage PaperLink TxAgent-PIP ToolUniverse-PIP TxAgent ToolUniverse HuggingFace Model context protocol (MCP)

    ToolUniverse is a collection of biomedical tools designed for use by Agentic AI. It is a critical component of TxAgent, providing the agent with the ability to access and leverage a vast array of biomedical knowledge to solve complex therapeutic reasoning tasks. ToolUniverse includes 211 biomedical tools that address various aspects of drugs and diseases. These tools are linked to trusted sources, including all US FDA-approved drugs since 1939 and validated clinical insights from Open Targets and Monarch Initiative.

    !TxAgent

    Install

    Install from source

    python -m pip install . --no-cache-dir
    

    Install from Pypi

    Pip page (https://pypi.org/project/tooluniverse)

    pip install tooluniverse
    

    Usage

    ToolUniverse supports both a Python SDK and an MCP server interface.

    • You can use the Python SDK to interact with ToolUniverse programmatically in your Python projects.
    • You can connect to the ToolUniverse MCP server for remote tool execution and integration with other agentic systems.

    For more detailed usage examples, see the README_USAGE page.

    For MCP integration with Claude Desktop App, see the MCP for Claude Tutorial.

    Citation

    @misc{gao2025txagent,
          title={TxAgent: An AI Agent for Therapeutic Reasoning Across a Universe of Tools},
          author={Shanghua Gao and Richard Zhu and Zhenglun Kong and Ayush Noori and Xiaorui Su and Curtis Ginder and Theodoros Tsiligkaridis and Marinka Zitnik},
          year={2025},
          eprint={2503.10970},
          archivePrefix={arXiv},
          primaryClass={cs.AI},
          url={https://arxiv.org/abs/2503.10970},
    }
    

    Contact

    If you have any questions or suggestions, please email Shanghua Gao and Marinka Zitnik.

    Core contributors

    Shanghua Gao; Richard Zhu; Zhenglun Kong; Sufian Aldogom

    Star History

    Star History

    Mar 13Mar 21Mar 29Apr 4Apr 16May 6May 16Jun 3Jun 17Jul 104080120160
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